FastQCFastQC Report
Sat 8 Jul 2017
HNCHNBCXY_s1_1_illumina12index_17_SL254627.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename HNCHNBCXY_s1_1_illumina12index_17_SL254627.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 3093653
Filtered Sequences 0
Sequence length 251
%GC 54

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[FAIL] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TAATA 3476120 7.947569 56.00648 110-119
CACAG 4540115 6.8806896 39.13678 110-119
TCCCT 4910380 6.366313 90.313446 30-34
CAGTA 3891060 6.2530274 40.51891 60-69
ATACA 2805970 6.050137 29.366644 110-119
GGAGA 4891900 6.011287 90.19795 35-39
GGTGA 5336530 5.7555113 91.45302 45-49
AGTAA 2884915 5.6011558 41.347565 110-119
CCCTG 4980490 5.4834003 53.847565 30-34
GTAAT 3103590 5.2886405 36.207756 110-119
GGCCC 5276840 4.9335203 57.20788 60-69
AGACG 3554170 4.850267 96.70601 40-44
ACAGT 3012165 4.840622 32.534492 110-119
GTGAC 3978215 4.764867 81.2196 45-49
GAGAC 3478405 4.7468734 126.351685 40-44
GTAGT 3729380 4.7364883 24.352016 70-79
CCCCA 3378670 4.7068057 97.6272 60-69
GTGTC 4136550 4.3484645 24.933922 120-129
ACCAG 2847250 4.3150983 93.3853 45-49
ACTCC 2896520 4.278724 91.34962 30-34
AATAC 1955610 4.21662 29.595398 110-119
CGTGT 3993450 4.1980333 24.111145 120-129
CCCTT 3231090 4.189111 64.62335 20-24
GCACA 2760885 4.184209 33.149067 110-119
TGACC 3090410 4.110704 148.18855 45-49
TGGTG 4215615 3.9904418 28.782238 25-29
GACCA 2610000 3.955538 104.69931 45-49
TAGTA 2314820 3.944545 25.365385 80-89
CTCAG 2931765 3.899683 29.333357 140-149
CCCAG 3095515 3.8830752 80.863464 60-69
CCACT 2622855 3.8744676 26.729023 240-247
CACTC 2617025 3.8658555 77.14325 25-29
TGAGG 3480320 3.7535667 68.42837 35-39
AGTAG 2591050 3.7493896 26.633715 70-79
CTTGG 3479815 3.6580849 38.515186 20-24
CAGGG 3587780 3.6491647 33.71036 50-59
GACGG 3576615 3.6378086 109.93011 40-44
CTCCC 2930735 3.5833738 55.748825 30-34
AGGAG 2908075 3.5735142 89.442665 35-39
CTGAG 2972210 3.5599346 95.42837 35-39
TGTCT 2837905 3.5130994 20.776348 180-189
GCCCC 3381290 3.5107756 72.59089 60-69
ACGGT 2925870 3.504432 91.787964 40-44
ATGGT 2755105 3.4991133 24.64275 190-199
TCTTG 2763240 3.4206693 19.041008 170-179
AGGCT 2854265 3.4186678 44.83545 30-34
AAAAA 1146450 3.4027069 14.9372835 230-239
GCCCT 3049665 3.3576086 33.561375 20-24
AGATA 1727535 3.354065 18.124144 150-159
TGTCC 2831680 3.3058217 18.913317 120-129
CTTCA 2109955 3.3049753 16.903078 200-209
GAGGA 2678940 3.2919474 124.92788 35-39
CCAGG 2887725 3.2618284 38.874386 50-59
CCTGG 3280270 3.2519953 31.79044 50-59
TCAGG 2666695 3.1940076 19.330801 140-149
GATGG 2960600 3.1930425 33.098965 15-19
TTCCC 2460160 3.1896002 54.84755 50-59
ATGCA 1982980 3.1866968 76.78965 25-29
GGGTT 3365275 3.1855218 43.150482 50-59
CTCTC 2429180 3.1494346 13.210144 100-109
CCGTG 3120465 3.093568 24.05019 120-129
GGATG 2820315 3.0417435 55.942936 20-24
CCAGT 2279415 3.0319607 40.307896 60-69
TGGAG 2788745 3.007695 32.439957 25-29
TGCAC 2249730 2.9924748 100.19672 25-29
ACAGA 1626235 2.9776294 13.928658 140-149
GGTTC 2820130 2.9646044 48.461205 50-59
TCGCA 2216955 2.9488795 23.807486 100-109
TCTCA 1882045 2.9479835 20.140722 130-139
TCTCT 2117340 2.910856 15.561246 180-189
TGGCC 2913750 2.8886344 38.98031 60-69
CGCAC 2302545 2.8883579 23.846846 100-109
GACTC 2167000 2.882432 20.00585 190-199
TACAC 1614460 2.8812919 21.223333 110-119
AGGGT 2592630 2.7961824 50.54282 50-59
TTCTT 1904485 2.7762911 21.430382 170-179
GCCGT 2797775 2.7736592 22.726677 120-129
GTTCC 2374640 2.772254 54.83349 50-59
CAGAT 1715715 2.7571955 15.131128 150-159
CGGAT 2281095 2.7321591 62.97203 20-24
CGGTG 3048800 2.7216463 67.02215 40-44
GCACT 2044410 2.7193692 70.42711 25-29
GGTTG 2857070 2.7044623 58.827377 15-19
ACCAC 1602985 2.6979392 15.222601 230-239
CCTGA 2022880 2.690731 62.67777 30-34
AATAA 1013885 2.6411507 12.768731 110-119
GGCTG 2944835 2.628837 25.19159 30-34
AGTCA 1631240 2.621442 28.644434 70-79
TCACA 1468160 2.6201935 11.528594 140-149
CGGCC 2789980 2.6084597 10.606636 120-129
AGGGA 2112685 2.5961194 9.433687 150-159
GAGAT 1791105 2.591826 17.136578 180-189
TCAAA 1193115 2.572554 52.780468 70-79
AGATG 1729360 2.5024776 16.513315 180-189
GTTGG 2635615 2.494836 45.69827 15-19
CTGGC 2500360 2.4788077 34.832294 60-69
TGTTC 1979530 2.4504998 12.82206 140-149
GATGC 2025595 2.426136 74.064926 25-29
GTCTC 2054930 2.399011 12.64876 180-189
TTGTC 1887195 2.3361964 15.051886 170-179
ACTCT 1491160 2.335712 12.708847 200-209
CTGGA 1937995 2.321214 15.0554905 180-189
CATTT 1392770 2.3132992 17.485584 150-159
TCATT 1391885 2.3118293 16.23342 150-159
TCCAT 1463655 2.292629 12.095948 70-79
TTCAT 1373680 2.281592 17.109179 140-149
GTTCT 1840655 2.2785835 17.666788 160-169
TCCTC 1751985 2.2714505 14.742304 130-139
CAGAG 1663580 2.270237 9.2020445 140-149
TTGGT 2022670 2.2546544 41.703403 25-29
ACAGC 1485895 2.2519212 11.833708 120-129
GGCGG 2926805 2.2187154 36.281757 20-24
TGTAG 1738515 2.2079961 8.1911545 210-219
GTGAA 1517340 2.1956732 16.769497 190-199
TTCAC 1399380 2.1919503 17.360098 200-209
CACTA 1224120 2.1846607 14.112695 240-247
GCGGA 2135995 2.1725407 76.25859 20-24
ATATA 941580 2.1527658 10.53646 110-119
TGAAT 1255430 2.1393025 14.60973 190-199
TAGTC 1511810 2.1323311 24.621597 70-79
AATAT 932485 2.1319714 12.668715 110-119
ATTTG 1423845 2.1294992 15.141521 150-159
CTCTG 1823315 2.1286142 14.939831 180-189
TCTGC 1818370 2.122841 11.000782 210-219
GAATC 1318015 2.1180818 15.211165 190-199
GAGTC 1760735 2.1089027 12.64817 210-219
CAGCC 1653350 2.0739949 10.9314575 120-129
ACTAC 1158880 2.068228 11.668219 230-239
CCTTG 1762570 2.057698 43.349537 20-24
TTGGA 1619460 2.0567908 16.437761 170-179
CCTTC 1572270 2.0384498 13.564672 200-209
GTTCA 1443055 2.035356 15.479469 140-149
TCTCG 1739910 2.0312436 16.325808 100-109
GATAC 1257325 2.0205517 13.006995 150-159
TCGGC 2036065 2.0185149 8.818366 190-199
GATAT 1176900 2.005484 9.24413 180-189
CTCGC 1817400 2.000914 16.60555 100-109
CTACT 1276180 1.9989731 7.9117355 230-239
ATATG 1163745 1.9830675 9.104791 180-189
TTGGG 2089440 1.9778345 71.9871 15-19
GTCAA 1225385 1.9692233 38.604317 70-79
AATCG 1225315 1.9691107 13.928447 190-199
AATAG 1012530 1.9658597 7.919461 110-119
ACACA 960745 1.9535884 12.966479 110-119
CACGG 1714890 1.9370532 7.503293 200-209
ATAGA 996865 1.9354455 9.4278555 240-247
GTTGT 1723245 1.9208877 7.577762 210-219
GCTGA 1595470 1.9109582 38.806 30-34
GAACT 1187870 1.9089355 10.977188 160-169
TACAG 1187750 1.9087429 11.353755 160-169
TTGCA 1352645 1.9078373 13.351155 150-159
GTCAC 1418830 1.8872546 9.173943 140-149
TGGAA 1297170 1.8770752 9.309612 25-29
GTCCT 1604375 1.8730142 12.86787 130-139
AGTCT 1327680 1.8726252 13.029997 210-219
TTTGC 1512335 1.8721497 11.602882 150-159
GCTGT 1779730 1.870905 9.798521 140-149
TCCCA 1255690 1.8548988 11.050253 240-247
TACCA 1039175 1.8545932 11.813914 230-239
GGTCA 1540175 1.8447291 9.296859 130-139
TACTA 969210 1.8341515 10.026977 230-239
ATTGT 1223150 1.8293403 8.647828 170-179
GTCTG 1736500 1.8254604 8.87923 210-219
AGTAT 1066455 1.8172816 11.421218 220-229
TCAGC 1350400 1.7962327 10.798208 140-149
CAGGC 1589365 1.7952665 13.378947 140-149
CATAG 1113615 1.7896061 7.9611497 210-219
CTGTT 1444465 1.7881317 12.41342 140-149
CTCCA 1196900 1.7680546 8.496336 240-247
TGGGG 2188065 1.758836 43.005756 15-19
CACCA 1041215 1.7524399 10.868594 230-239
ATGTA 1019035 1.736476 10.172115 70-79
GTGGA 1598105 1.7235754 39.98496 25-29
TTCAG 1219635 1.7202334 9.851969 150-159
ATAGT 1003090 1.709305 7.108481 220-229
TTGTA 1142435 1.7086232 9.530929 210-219
ATCTC 1089855 1.707119 6.7218757 100-109
TCTGG 1620135 1.7031341 12.2997465 180-189
CCAGA 1115375 1.6903863 22.378101 60-69
GCAGA 1209345 1.6503563 13.270074 150-159
CCCAC 1182055 1.646714 10.355113 240-247
AGAAC 897920 1.6440878 10.289242 160-169
GGAGG 1787675 1.6372638 27.044474 30-34
CAGCT 1227685 1.6330035 8.996673 150-159
ACGGC 1440645 1.6272799 11.832712 120-129
TGACT 1150890 1.623272 11.832804 190-199
ATAAT 709115 1.6212732 5.7023897 110-119
TGCAG 1353185 1.6207638 12.52644 150-159
GGGGC 2136955 1.6199559 39.573647 15-19
GACGT 1329405 1.5922818 9.888352 170-179
CACTG 1185880 1.5773966 6.4724784 230-239
AACCA 774635 1.5751505 11.774704 70-79
GGACG 1540090 1.56644 7.8003254 170-179
GGGCG 2053190 1.5564564 47.12295 20-24
TGGTT 1395005 1.5550011 16.422453 10-14
ATGGG 1438530 1.5514718 54.428402 15-19
GTCCC 1407055 1.549134 16.388893 50-59
ATAAA 593985 1.5473193 6.338518 110-119
GAGAA 936500 1.5440363 10.391031 160-169
CAAAA 628395 1.5437605 19.389988 70-79
AACTG 959520 1.5419719 10.149022 160-169
CGTAG 1282990 1.5366883 8.389701 210-219
CGACT 1151325 1.5314333 8.909985 190-199
ACGGA 1117000 1.5243359 9.772461 200-209
ACTGA 948405 1.5241098 7.430974 180-189
CTCTT 1108450 1.5238642 8.872914 200-209
ATCGG 1264585 1.5146443 9.727655 190-199
CAAAG 824790 1.510187 26.828333 70-79
TCGAC 1125615 1.4972351 9.668189 190-199
ACACG 983270 1.4901772 9.005374 120-129
TCAGA 923730 1.4844564 8.745481 130-139
AGCTC 1111350 1.4782606 9.2212515 140-149
CCTCG 1339385 1.4746311 8.869018 130-139
AAATA 565625 1.4734422 5.2167025 6
CCACC 1046110 1.4573298 7.923964 230-239
CTGGT 1380940 1.4516852 6.8838515 160-169
TCCAC 976575 1.4425914 9.994937 240-247
GCTCT 1233350 1.4398642 9.124841 130-139
AGCCG 1263340 1.427005 10.648828 120-129
AGAGA 864275 1.4249567 12.843758 35-39
CCATC 958520 1.4159206 10.850727 240-247
GGCCG 1677440 1.4121877 11.545336 120-129
TGGAC 1169420 1.400661 10.590804 170-179
AATTG 821825 1.4004223 9.518406 170-179
CTTGA 992605 1.4000189 9.229678 200-209
CTCGA 1051655 1.3988575 8.738263 190-199
GAGGG 1521480 1.3934659 8.87051 200-209
CAATA 645545 1.3919023 7.665171 100-109
ACTAT 727145 1.3760629 7.434046 230-239
TAGTT 910700 1.3620408 8.191584 220-229
AGATC 846760 1.3607637 5.6190605 130-139
GAGGC 1327400 1.350111 23.622593 30-34
CAGAC 889040 1.3473685 11.252865 60-69
GAATT 782555 1.3335047 10.463069 170-179
TATGG 1046640 1.3292823 6.596595 180-189
GGGAG 1445100 1.3235122 6.6031547 150-159
ATCCA 737465 1.3161379 15.792651 240-247
CATGT 932715 1.3155472 9.713531 70-79
ACCAT 734080 1.3100969 10.3207 45-49
TTCCA 835520 1.3087357 7.2700453 230-239
TCACG 977775 1.300586 8.757279 200-209
GGCTC 1310435 1.2991395 8.278322 130-139
GGTGG 1602220 1.2879152 40.035923 25-29
GTGCT 1221880 1.2844765 7.2702827 220-229
TATAC 676975 1.2811202 6.291279 110-119
ACTTC 816230 1.2785202 5.625723 220-229
GGAAT 880665 1.27437 8.58628 170-179
ACTGT 900210 1.2697006 5.25311 230-239
GTGTT 1136840 1.2672266 7.553193 160-169
GGGCC 1503590 1.2658285 31.036104 15-19
ACTCG 949850 1.2634417 9.121145 190-199
CCATG 945515 1.2576754 9.713675 70-79
ACGTG 1049900 1.2575074 9.27733 170-179
AAGTA 639625 1.2418525 16.242271 70-79
TATCA 654930 1.2394018 5.564778 70-79
TGGGC 1387885 1.2389569 33.22849 15-19
TGTGC 1176130 1.2363828 6.2906895 220-229
CCTCA 833525 1.2312789 5.798039 130-139
CTGAA 765710 1.2305144 13.206194 35-39
GTCCA 924975 1.2303542 11.256385 70-79
AAAGT 625245 1.2139333 19.801561 70-79
GGAGT 1123865 1.2121018 6.9273405 210-219
GCTCA 908535 1.2084866 9.107415 140-149
TGATA 705740 1.202609 6.754767 180-189
TTGAG 946275 1.2018139 8.30025 200-209
GCGTA 992100 1.188278 8.986387 210-219
AGTTC 831060 1.1721679 5.6340675 160-169
GAAGA 710710 1.1717694 17.770605 35-39
GAACC 772390 1.1705816 8.660596 70-79
CTGAT 823915 1.1620903 6.2050986 180-189
GCATA 717935 1.153739 7.8077044 210-219
ACAAT 530470 1.1437815 8.500437 100-109
CTGCG 1150940 1.1410193 6.3766294 210-219
ACTGG 936955 1.1222286 6.8274345 160-169
TGCCC 1016440 1.1190763 9.050686 60-69
TATGT 739340 1.1057552 7.4442253 220-229
TCCAG 830335 1.104469 5.714318 240-247
TAGAT 641575 1.0932692 7.854009 240-247
AAAAG 493985 1.0927564 12.614549 70-79
GTCTA 770670 1.0869908 7.241866 180-189
AAGAG 655750 1.0811552 12.55835 35-39
CCCAA 641935 1.0804229 8.848565 240-247
AGAGC 789210 1.0770109 6.319179 140-149
AGGTT 842560 1.0700909 18.018803 10-14
ATATC 560765 1.0612023 5.702875 70-79
GCGGT 1177875 1.0514822 6.9037337 130-139
CGGCT 1058985 1.049857 7.3021555 130-139
CTCGG 1050485 1.0414302 7.142971 130-139
TGGTC 989350 1.040034 8.08087 50-59
ATAAC 481120 1.0373746 6.989562 80-89
CCAAT 574790 1.0258154 10.004539 240-247
GTGGT 1077350 1.0198044 7.1690536 50-59
TCTGT 822830 1.0185975 5.1984663 210-219
TCTAC 646710 1.0129887 6.9090576 180-189
TATAA 442300 1.0112451 7.2114515 240-247
ACCCA 600770 1.0111392 10.896897 240-247
CATCA 562720 1.0042742 5.862874 230-239
TACTG 689200 0.9720817 5.018505 180-189
CGGAG 951695 0.9679779 6.490357 210-219
CGGTC 971130 0.96275926 6.888276 130-139
GTCAG 799690 0.95782065 5.0772276 130-139
CGATG 789220 0.9452805 22.069002 15-19
TGTAA 553675 0.9434842 6.20661 230-239
ACTAA 435515 0.9390427 10.890468 240-247
TAGAC 582555 0.93617994 5.0936 110-119
GAGTT 736980 0.93599933 5.1797514 160-169
GCTTC 799055 0.9328501 5.087248 150-159
CTTCC 712920 0.92430145 5.038161 230-239
CCAGC 731595 0.91772723 5.91977 80-89
AGCTT 647260 0.91292745 5.425333 150-159
TGAAG 629765 0.91130406 9.441307 35-39
ACCGT 683070 0.9085846 12.671498 45-49
TGAAC 561965 0.9030913 5.1576767 190-199
TGCAT 626205 0.8832303 6.569357 210-219
GGAAG 711045 0.8737496 10.314526 30-34
CTACC 586735 0.8667218 6.4394455 230-239
ATCAA 400910 0.8644285 12.457584 70-79
AGACC 567945 0.86073875 5.4460344 240-247
TGCGT 813030 0.8546813 6.7897625 210-219
AGCTG 700860 0.83944815 7.2252173 30-34
GTATG 660130 0.83839625 5.266846 220-229
AATCC 468530 0.8361754 9.486335 240-247
GAGCT 684450 0.8197933 5.2307014 140-149
ACGTC 611650 0.8135854 7.179608 70-79
CCTTT 589005 0.8097466 6.1050534 50-59
AGCCA 529980 0.80320156 7.4330792 80-89
TGAGA 535510 0.774912 5.93375 240-247
TAACC 429600 0.7666978 6.5328417 80-89
CTAAT 396375 0.7501075 8.682239 240-247
AAAGG 454640 0.74957895 7.3773875 10-14
TCGAA 461620 0.74183446 12.710488 70-79
TAGGT 579245 0.7356685 6.18628 10-14
GACCG 644705 0.72822624 13.160759 45-49
AGGAT 499045 0.72214514 8.587078 10-14
TGGAT 559155 0.7101532 7.362319 10-14
ATACC 396275 0.7072234 5.7707577 240-247
GAAGT 479915 0.694463 5.116192 70-79
GGTCC 700300 0.69426364 9.024978 50-59
CAATC 388220 0.6928479 9.437022 240-247
GTCGA 558665 0.6691354 8.625315 70-79
AATGG 462310 0.66898763 5.522 10-14
CGAAC 428720 0.6497388 8.830512 70-79
AAGGT 448565 0.64909786 6.90911 10-14
CATCC 436440 0.64470685 7.353685 240-247
ACGAT 395455 0.63550574 8.297101 10-14
CTTTG 513310 0.6354366 5.3605275 50-59
AAAGC 338980 0.620671 8.677055 70-79
TTTCG 500985 0.62017936 5.0161047 100-109
GAAGC 434020 0.59229386 9.311223 30-34
ATAGG 404635 0.58552873 5.6259794 10-14
CGTCC 519200 0.57162684 5.773514 70-79
TTGCC 476500 0.55628604 5.8405557 60-69
AAGCT 345905 0.5558776 14.532724 30-34
TCAAG 341085 0.5481318 5.602409 70-79
GACGA 367570 0.5016116 6.339069 40-44
GGGAT 439710 0.47423247 6.2637286 10-14
AAGCA 258540 0.47338563 5.5044355 70-79
CGGTT 449915 0.47296405 9.66436 10-14
TAAAG 239665 0.46531734 5.038695 9
TCGAT 306110 0.4317526 6.645873 10-14
GCGAT 275435 0.32989955 5.667273 10-14