FastQCFastQC Report
Sat 8 Jul 2017
HNCHNBCXY_s1_1_BC_X.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename HNCHNBCXY_s1_1_BC_X.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 15105383
Filtered Sequences 0
Sequence length 251
%GC 53

[FAIL] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[FAIL] Per sequence GC content

Per sequence GC content graph

[WARN] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[FAIL] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TAATA 13770745 6.2520266 41.925377 110-119
CACAG 17285260 5.847055 33.266506 110-119
TCCCT 18665675 5.63427 79.312416 30-34
CAGTA 15268395 5.318579 33.228596 60-69
GGAGA 18694370 5.1821647 77.845024 35-39
CCCTG 18920810 5.020677 49.312412 30-34
GGTGA 20085035 5.004079 79.41817 45-49
ATACA 10849915 4.783533 23.053282 110-119
GGCCC 19918205 4.646238 53.71342 60-69
AGTAA 11552870 4.61086 32.281708 110-119
GTAAT 12144480 4.356343 28.699492 110-119
AGACG 13988040 4.2833915 82.6861 40-44
CCCCA 13061180 4.2597523 88.77117 60-69
GTGAC 15171210 4.1754394 70.85529 45-49
ACAGT 11758245 4.095856 27.036556 110-119
GTAGT 14406605 4.0830483 20.504496 70-79
GAGAC 13294215 4.0709295 108.85812 40-44
GTGTC 15826965 3.9149907 21.752306 120-129
ACCAG 11453360 3.8743083 79.09162 45-49
CGTGT 15135715 3.7440016 20.854774 120-129
TGACC 12275440 3.7320673 128.36424 45-49
CCCTT 12131575 3.6619391 55.976166 20-24
TGGTG 16335575 3.657944 25.783237 25-29
GACCA 10624185 3.593825 88.68854 45-49
ACTCC 10671065 3.5838566 76.85623 30-34
GCACA 10495215 3.5501988 28.11167 110-119
CCCAG 11912030 3.516878 73.461784 60-69
AATAC 7868510 3.4690852 23.33824 110-119
CTCAG 11259020 3.423048 25.272451 140-149
GACGG 14064925 3.4028912 98.71616 40-44
GCCCC 13203600 3.4023118 69.37127 60-69
TGAGG 13638170 3.397877 60.51721 35-39
CTTGG 13663790 3.3799033 33.44821 20-24
CTCCC 11464630 3.3605714 50.55178 30-34
CACTC 9937935 3.3376362 65.69405 25-29
AGTAG 10454460 3.2966542 22.338322 70-79
CAGGG 13555230 3.2795746 29.918587 50-59
TAGTA 9119120 3.2711167 21.21088 80-89
CCACT 9719235 3.2641864 22.006897 240-247
CTGAG 11797750 3.2469916 84.13861 35-39
AGGAG 11529755 3.196101 77.060646 35-39
AAAAA 5654770 3.1781623 8.217377 230-239
ACGGT 11536555 3.175105 79.40933 40-44
TGTCT 11105815 3.125035 18.301945 180-189
ATGGT 10974285 3.1102774 20.821575 190-199
TCTTG 11043245 3.1074283 17.049156 170-179
GCCCT 11537380 3.0614686 30.767256 20-24
AGGCT 11110620 3.0578785 38.55878 30-34
TGTCC 10906845 2.9803183 16.532116 120-129
GAGGA 10684620 2.9618256 108.12204 35-39
CCAGG 10997850 2.9393332 34.316956 50-59
GATGG 11707230 2.9167936 29.46833 15-19
CTCTC 9603475 2.8988276 12.049775 100-109
CCGTG 12032625 2.8903637 21.570578 120-129
CCTGG 12001400 2.8828635 28.60189 50-59
TTCCC 9529560 2.876516 48.591526 50-59
GGGTT 12800940 2.8664508 38.14225 50-59
TCAGG 10360315 2.851379 17.092089 140-149
ATGCA 7906650 2.7541957 61.67567 25-29
GGATG 11039995 2.7505555 47.548317 20-24
CTTCA 7924660 2.7407186 13.642792 200-209
TGGCC 11334120 2.7225757 35.555058 60-69
AGATA 6818235 2.7212222 14.0776 150-159
TGGAG 10843845 2.701686 27.423183 25-29
GGTTC 10901630 2.6966496 42.76443 50-59
TCTCT 8633020 2.6834755 13.94993 180-189
TCGCA 8806735 2.6774867 20.474964 100-109
GCCGT 11068745 2.65883 20.65487 120-129
TGCAC 8740905 2.6574726 85.46366 25-29
CGCAC 8929370 2.636285 21.211283 100-109
CCAGT 8538285 2.5958707 34.858932 60-69
CGGTG 11912855 2.5904644 61.713142 40-44
ACAGA 6652135 2.5781736 11.068968 140-149
AGGGT 10340430 2.5762627 43.642212 50-59
TCTCA 7414885 2.5644145 16.676046 130-139
GTTCC 9287110 2.5377223 48.515835 50-59
GGTTG 11291395 2.5284257 51.58181 15-19
CCTGA 8308360 2.5259671 54.973183 30-34
TTCTT 7874795 2.5206645 18.226921 170-179
GACTC 8273070 2.5152383 16.345068 190-199
GGCTG 11516250 2.5042222 23.138443 30-34
TCAAA 5615650 2.4758394 42.710167 70-79
CGGCC 10582675 2.4685771 10.174976 120-129
GCACT 8070405 2.4536226 60.294228 25-29
CAGAT 6935830 2.4160206 12.702557 150-159
TACAC 6245800 2.4033704 17.417938 110-119
AATAA 4757390 2.4031506 10.104097 110-119
CGGAT 8710645 2.3973546 53.234474 20-24
CTGGC 9889205 2.3754919 31.761139 60-69
GTTGG 10515765 2.3547428 40.28758 15-19
ACCAC 6273780 2.3443422 12.50451 230-239
TCACA 6027940 2.3195386 9.630027 140-149
TGTTC 8150685 2.2934988 11.200635 140-149
AGTCA 6555075 2.283389 23.827766 70-79
GATGC 8192450 2.2547364 62.881546 25-29
GGCGG 11652095 2.2273803 34.046345 20-24
AGATG 7028260 2.2162545 13.609446 180-189
TTGGT 8522480 2.1709008 35.87981 25-29
GTCTC 7938090 2.1690996 11.53766 180-189
AGGGA 7815520 2.166498 7.6628776 150-159
GAGAT 6828515 2.1532679 13.427147 180-189
CATTT 5954795 2.12076 14.850521 150-159
TTGTC 7516700 2.1151035 13.018121 170-179
GTTCT 7455835 2.0979772 15.034998 160-169
TCATT 5883670 2.0954292 13.826844 150-159
TTCAT 5838580 2.0793707 13.928417 140-149
TCCTC 6868560 2.0732882 13.3550415 130-139
ACAGC 6034240 2.041192 10.397746 120-129
CTGGA 7409395 2.0392232 13.069767 180-189
TCCAT 5876710 2.0324416 10.595242 70-79
TCTGC 7433000 2.0310829 9.59235 210-219
GTCAA 5797205 2.019393 32.844177 70-79
GCGGA 8301045 2.0083685 66.55803 20-24
CCTTG 7253315 1.9819837 37.369095 20-24
ACTCT 5730005 1.981704 10.14193 200-209
CAGAG 6464700 1.9796082 7.5635085 140-149
TGTAG 6971990 1.9759668 6.9697638 210-219
TCGGC 8175605 1.9638671 7.7437854 190-199
CTCGC 7377640 1.9576727 14.942525 100-109
TGAAT 5430895 1.9481146 11.887779 190-199
AATAT 4290365 1.9478595 9.788397 110-119
CTCTG 7123740 1.946577 13.429526 180-189
ATTTG 6005245 1.9360875 12.988255 150-159
TCTCG 7039325 1.9235104 14.326849 100-109
CAGCC 6469540 1.9100509 9.96865 120-129
TAGTC 6085530 1.9052489 20.442802 70-79
TTGGA 6702305 1.899534 14.236145 170-179
GCTGA 6892850 1.897059 34.497307 30-34
GTTCA 6040910 1.8912796 13.061292 140-149
TTCAC 5463510 1.8895375 14.055946 200-209
TTGGG 8424365 1.8864261 63.545727 15-19
GAGTC 6813410 1.8751953 10.882943 210-219
CCTTC 6194765 1.8699018 11.769653 200-209
CACTA 4854630 1.8680513 11.889908 240-247
GAATC 5310320 1.8497922 12.362554 190-199
GTGAA 5800310 1.8290391 13.865922 190-199
ATATA 3951550 1.7940348 8.067244 110-119
GGTCA 6498340 1.7884812 8.301746 140-149
CTACT 5160120 1.7846111 6.960518 230-239
GCTGT 7212780 1.7841681 9.019043 140-149
TTGCA 5691630 1.7819275 11.590376 150-159
TTTGC 6332140 1.7817835 10.51527 150-159
CACGG 6663570 1.7809346 6.5834036 200-209
AATAG 4436875 1.7707988 6.3618293 110-119
GATAC 5079695 1.7694564 10.604036 150-159
ACTAC 4573615 1.7599171 9.75275 230-239
CAAAA 3583845 1.7580068 15.7619 70-79
GTCCT 6425695 1.7558346 11.630618 130-139
AACCA 4083480 1.748284 9.988767 70-79
GTTGT 6825615 1.7386644 6.3095465 210-219
TACCA 4511295 1.7359369 9.668401 230-239
CTGTT 6167165 1.7353618 10.978874 140-149
TGGGG 8802905 1.7328354 39.86439 15-19
CAGGC 6452400 1.7244966 12.424194 140-149
TCAGC 5665165 1.7223643 9.56092 140-149
TACAG 4888890 1.7029917 9.714013 160-169
AATCG 4882825 1.7008786 10.956883 190-199
TGGAA 5373950 1.694593 7.6513352 170-179
GATAT 4723040 1.6942002 7.220105 180-189
ACACA 3956675 1.6939942 10.750642 110-119
ATTGT 5228105 1.685538 7.191323 170-179
CACCA 4493430 1.6790735 9.290713 230-239
GTCAC 5517810 1.6775641 7.9464765 140-149
ATATG 4664975 1.6733718 7.2326922 180-189
ATAAA 3302535 1.6682444 5.3054247 110-119
TCTGG 6715385 1.6611315 11.22525 180-189
GCAGA 5408850 1.6562879 11.616093 150-159
TCCCA 4923665 1.6536033 9.580641 240-247
GTCTG 6642830 1.643184 7.885632 210-219
ATAGA 4112500 1.6413376 7.363445 240-247
GGAGG 7452110 1.6321476 24.709745 30-34
GGGGC 8482955 1.6215768 37.604355 15-19
GTGGA 6453410 1.6078324 34.198452 25-29
AGTCT 5134440 1.6074831 10.828909 210-219
ACGGC 5981640 1.5986792 10.83354 120-129
AGTAT 4452240 1.5970616 9.396264 220-229
CCAGA 4689080 1.586167 20.037003 60-69
ATCTC 4582675 1.5849036 5.9765487 100-109
TTCAG 5057900 1.5835198 8.49551 150-159
CATAG 4518125 1.5738394 6.3053102 210-219
TGGTT 6172140 1.5722071 14.228363 10-14
TGCAG 5699705 1.5686798 11.240532 150-159
TACTA 3946520 1.563824 8.32827 230-239
GGGCG 8144515 1.5568814 44.406 20-24
CAGCT 5077190 1.5436039 7.7958503 150-159
ATAGT 4245330 1.522841 5.800452 220-229
GTCCC 5718055 1.5172981 15.898848 50-59
GAACT 4344405 1.5133263 8.45042 160-169
CTCTT 4836355 1.5033256 7.527839 200-209
GGACG 6194670 1.4987485 6.8733926 170-179
ATGGG 5963055 1.4856632 47.858143 15-19
CTGGT 5996360 1.483272 6.0553794 160-169
CAAAG 3826055 1.4828672 22.771503 70-79
ACCAT 3850010 1.4814755 9.048089 45-49
GACGT 5361820 1.4756868 8.34433 170-179
CAATA 3341120 1.47304 6.3507977 100-109
AGAAC 3791420 1.469444 8.200935 160-169
ATGTA 4088270 1.4665021 8.632562 70-79
CTCCA 4357975 1.4636174 6.7788115 240-247
TTGTA 4533600 1.46163 7.470844 210-219
GAGAA 4161755 1.460149 8.303006 160-169
CACTG 4801880 1.459902 5.4441285 230-239
CCTCG 5499175 1.4592178 8.556593 130-139
TGACT 4637050 1.4517609 9.488074 190-199
GCTCT 5312040 1.4515262 8.273421 130-139
CCCAC 4445430 1.4498253 9.15129 240-247
ACTGA 4117680 1.434349 5.9292264 180-189
GGCCG 6712345 1.4174086 11.035622 120-129
ACGGA 4572865 1.4002942 8.166734 200-209
AACTG 4014295 1.398336 8.067898 160-169
CCATC 4155980 1.3957778 9.2939415 240-247
TCAGA 4000300 1.393461 6.9167886 130-139
CGACT 4563870 1.3875406 7.575292 200-209
AGCTC 4552720 1.3841507 7.9072237 140-149
AGCCG 5154695 1.3776662 9.632811 120-129
CCACC 4217985 1.3756468 7.160303 240-247
GGTGG 6895250 1.3573171 36.646416 25-29
GAGGC 5608455 1.3569188 21.359161 30-34
CTTGA 4323155 1.3534873 7.6973557 200-209
GAGGG 6131280 1.3428618 7.752843 200-209
ATCGG 4827120 1.328526 8.092486 190-199
TGGAC 4817255 1.3258109 9.210905 170-179
TCCAC 3938860 1.3228585 8.325525 240-247
TCGAC 4346770 1.3215363 8.006735 190-199
GGGCC 6161235 1.3010337 29.609148 15-19
GGCTC 5415125 1.3007705 7.645689 130-139
TATGG 4557760 1.2917377 5.645081 180-189
GGGAG 5824435 1.2756572 5.847203 150-159
AATTG 3533115 1.2673626 7.5755906 170-179
ACACG 3741250 1.2655463 7.545149 120-129
CTCGA 4135210 1.2572162 7.272641 190-199
TGGGC 5719885 1.2437958 30.909073 15-19
TTCCA 3591755 1.2421969 6.4399724 230-239
CAGAC 3664750 1.2396687 10.052275 60-69
CCATG 4076915 1.2394929 8.985169 70-79
GTGCT 5001525 1.2371874 6.2544017 220-229
CCTCA 3675620 1.2344499 5.1898217 130-139
GCTCA 3998960 1.2157925 7.865287 140-149
GTGTT 4771590 1.2154499 6.5379763 160-169
CGTAG 4398660 1.2106047 6.921138 210-219
ACTAT 3054525 1.2103674 5.748013 230-239
CATCA 3117460 1.199592 5.205295 240-247
GGAGT 4811980 1.198879 6.2207623 210-219
GAATT 3338945 1.1977121 8.448214 170-179
AAAGT 2998640 1.1967854 16.561014 70-79
AGAGA 3408540 1.195884 10.367972 35-39
CTGAT 3812960 1.1937561 5.084821 180-189
AAAAG 2681075 1.190556 10.412486 70-79
ACGTG 4301295 1.1838078 7.9450245 170-179
TAGTT 3670325 1.1833106 6.901808 220-229
TGATA 3287625 1.1793029 5.360791 180-189
GTCCA 3878930 1.1793 10.214219 70-79
AAGTA 2942600 1.1744195 13.598423 70-79
CTGCG 4834165 1.1612177 5.813874 210-219
TCACG 3807480 1.1575775 7.4082017 200-209
GCGGT 5296185 1.1516616 6.4127393 130-139
TGCCC 4339005 1.1513642 9.488157 60-69
TTGAG 4054125 1.1489999 6.841554 200-209
CATGT 3663090 1.146835 8.57544 70-79
ACTCG 3762590 1.1439296 7.541665 190-199
TGTGC 4616080 1.1418431 5.4309764 220-229
TGGTC 4613150 1.1411183 7.691 50-59
ATAAC 2585340 1.1398301 5.8093896 80-89
CTGAA 3272110 1.139804 11.947767 35-39
GAAGA 3231505 1.1337714 15.324268 35-39
ATCCA 2945240 1.1333222 11.924849 240-247
GCGTA 4098340 1.1279504 7.7834315 210-219
ACAAT 2536705 1.1183878 6.8637075 100-109
AAGAG 3184295 1.1172078 10.307831 35-39
GAACC 3292305 1.1136825 7.531111 70-79
TATAC 2804755 1.1113952 5.2164016 110-119
ACTGG 3997415 1.1001736 5.819772 160-169
GGAAT 3427925 1.0809437 7.01634 170-179
CGGCT 4484255 1.0771656 7.001787 130-139
GTGGT 4798820 1.074576 6.707687 50-59
AGAGC 3467690 1.0618695 5.2943764 140-149
GCATA 3048365 1.0618649 5.9691396 210-219
CTCGG 4412205 1.0598583 7.0283504 130-139
GTCTA 3375440 1.0567777 6.2490106 180-189
AGGTT 3678295 1.042484 15.076385 10-14
TATGT 3224350 1.0395286 6.0797877 220-229
CCAAT 2656675 1.0222828 8.321782 240-247
CCAGC 3363855 0.9931361 5.105771 80-89
TATAA 2184660 0.9918529 5.6908183 240-247
ATCAA 2238870 0.98707765 10.303137 70-79
CGGTC 4107740 0.9867227 6.2918835 130-139
CGGAG 4069190 0.9845065 5.9481015 210-219
TCTAC 2838465 0.98167413 5.733903 180-189
CCCAA 2616475 0.9777061 7.382318 240-247
CGATG 3506600 0.9650909 19.805477 15-19
TAACC 2429265 0.93477595 5.5974417 80-89
TAGAT 2596410 0.93135744 6.0740767 240-247
ACCGT 3046785 0.9263054 11.532923 45-49
TGAAG 2895645 0.9130974 8.556758 35-39
CCTTT 2914915 0.90606797 5.6829515 50-59
AGCTG 3213990 0.8845584 6.3542595 30-34
TGCGT 3565315 0.8819236 6.0328236 210-219
CTACC 2603465 0.8743688 5.7609386 230-239
ACTAA 1980710 0.87325954 8.641883 240-247
GGAAG 3070625 0.8511913 8.547301 30-34
AGCCA 2504465 0.84718114 6.315232 80-89
TGTAA 2344110 0.84085494 5.030268 230-239
AAAGC 2165585 0.83931756 7.388113 70-79
AAAGG 2381375 0.83550376 6.2832603 10-14
TGCAT 2643425 0.8275996 5.0557246 210-219
CAATC 2126120 0.81812644 7.7428727 240-247
AATCC 2092365 0.8051375 7.6148224 240-247
ATACC 2035075 0.78309244 5.0014544 240-247
ACCCA 2095555 0.7830523 8.911084 240-247
AGGAT 2413430 0.76103824 7.479994 10-14
CTAAT 1917605 0.75985855 7.1974115 240-247
ACGTC 2455615 0.74657375 6.6546245 70-79
AAGCT 2093060 0.7290946 12.147708 30-34
TGGAT 2546380 0.72168237 6.099891 10-14
GAAGC 2356320 0.7215479 7.7552876 30-34
GACCG 2681555 0.7166841 12.408951 45-49
TCGAA 2056505 0.71636117 10.580343 70-79
GGTCC 2980430 0.7159309 9.082966 50-59
CGAAC 2062960 0.69783396 7.556972 70-79
AAGGT 2203985 0.69499296 5.521725 10-14
TAGGT 2433500 0.6896905 5.067614 10-14
ACGAT 1962125 0.68348485 7.3143845 10-14
CGTCC 2553935 0.6776922 5.646719 70-79
GACGA 2180910 0.66783416 6.0612144 40-44
GTCGA 2380330 0.6551174 7.6436744 70-79
TTGCC 2392405 0.65372974 5.918141 60-69
CATCC 1924290 0.6462691 5.94556 240-247
CGGTT 2419790 0.5985642 8.581412 10-14
GGGAT 2123260 0.52899885 5.612166 10-14
TCGAT 1436445 0.44972017 5.7879925 10-14